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LOC111271703 gamma-sarcoglycan-like [ Varroa jacobsoni ]

Gene ID: 111271703, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111271703
Gene description
gamma-sarcoglycan-like
See related
EnsemblRapid:LOC111271703
Gene type
protein coding
RefSeq status
MODEL
Organism
Varroa jacobsoni
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Dermanyssoidea; Varroidae; Varroa
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Genomic context

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See LOC111271703 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current vjacob_1.0 (GCF_002532875.1) Unplaced Scaffold NW_019214547.1 (107577..112903)

NW_019214547.1Genomic Context describing neighboring genes Neighboring gene zeta-sarcoglycan-like Neighboring gene uncharacterized LOC111271701

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019214547 Unplaced Scaffold Reference vjacob_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varroa jacobsoni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference vjacob_1.0

Genomic

  1. NW_019214547.1 Reference vjacob_1.0

    Range
    107577..112903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022852655.1 → XP_022708390.1  gamma-sarcoglycan-like isoform X1

    Related
    XP_022708390.1, XM_022852655.1
    Conserved Domains (1) summary
    pfam04790
    Location:87 → 352
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_022852657.1 → XP_022708392.1  gamma-sarcoglycan-like isoform X2

    Related
    XP_022708392.1, XM_022852657.1
    Conserved Domains (1) summary
    pfam04790
    Location:78 → 343
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_022852656.1 → XP_022708391.1  gamma-sarcoglycan-like isoform X2

    Related
    XP_022708391.1, XM_022852656.1
    Conserved Domains (1) summary
    pfam04790
    Location:78 → 343
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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