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LOC111254866 gamma-sarcoglycan-like [ Varroa destructor (honeybee mite) ]

Gene ID: 111254866, updated on 7-Dec-2023

Summary

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Gene symbol
LOC111254866
Gene description
gamma-sarcoglycan-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Varroa destructor
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Dermanyssoidea; Varroidae; Varroa
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Genomic context

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See LOC111254866 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Vdes_3.0 (GCF_002443255.1) Unplaced Scaffold NW_019211460.1 (13242207..13249282)

NW_019211460.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111254147 Neighboring gene gamma-sarcoglycan-like Neighboring gene uncharacterized LOC111254130 Neighboring gene WD repeat-containing protein 46-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019211460 Unplaced Scaffold Reference Vdes_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan-like; zeta-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varroa destructor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vdes_3.0 Primary Assembly

Genomic

  1. NW_019211460.1 Reference Vdes_3.0 Primary Assembly

    Range
    13242207..13249282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022816178.1 → XP_022671913.1  gamma-sarcoglycan-like isoform X3

    UniProtKB/TrEMBL
    A0A7M7MJN0
    Conserved Domains (1) summary
    pfam04790
    Location:15 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_022816176.1 → XP_022671911.1  gamma-sarcoglycan-like isoform X1

    UniProtKB/TrEMBL
    A0A7M7KUF8
    Conserved Domains (1) summary
    pfam04790
    Location:78 → 339
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_022816179.1 → XP_022671914.1  zeta-sarcoglycan-like isoform X4

    UniProtKB/TrEMBL
    A0A7M7L6Z3
    Conserved Domains (1) summary
    pfam04790
    Location:49 → 246
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_022816177.1 → XP_022671912.1  gamma-sarcoglycan-like isoform X2

    UniProtKB/TrEMBL
    A0A7M7L0J8
    Conserved Domains (1) summary
    pfam04790
    Location:72 → 333
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
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