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LOC111253785 polypeptide N-acetylgalactosaminyltransferase 5-like [ Varroa destructor (honeybee mite) ]

Gene ID: 111253785, updated on 7-Dec-2023

Summary

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Gene symbol
LOC111253785
Gene description
polypeptide N-acetylgalactosaminyltransferase 5-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Varroa destructor
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Dermanyssoidea; Varroidae; Varroa
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Genomic context

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See LOC111253785 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Vdes_3.0 (GCF_002443255.1) Unplaced Scaffold NW_019211460.1 (4299000..4345707)

NW_019211460.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111254775 Neighboring gene protein FAM136A-like Neighboring gene transcription factor Dp-1-like Neighboring gene uncharacterized LOC111253875

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019211460 Unplaced Scaffold Reference Vdes_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13-like; polypeptide N-acetylgalactosaminyltransferase 3-like; polypeptide N-acetylgalactosaminyltransferase 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varroa destructor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vdes_3.0 Primary Assembly

Genomic

  1. NW_019211460.1 Reference Vdes_3.0 Primary Assembly

    Range
    4299000..4345707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022813751.1 → XP_022669486.1  polypeptide N-acetylgalactosaminyltransferase 13-like isoform X1

    UniProtKB/TrEMBL
    A0A7M7KN89
    Conserved Domains (2) summary
    cd02510
    Location:183 → 486
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:497 → 622
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_022813752.1 → XP_022669487.1  polypeptide N-acetylgalactosaminyltransferase 3-like isoform X2

    UniProtKB/TrEMBL
    A0A7M7KNR0
    Conserved Domains (2) summary
    pfam00652
    Location:368 → 493
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl11394
    Location:165 → 357
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_022813753.1 → XP_022669488.1  polypeptide N-acetylgalactosaminyltransferase 5-like isoform X3

    UniProtKB/TrEMBL
    A0A7M7KVD1
    Conserved Domains (2) summary
    cd02510
    Location:23 → 326
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:337 → 462
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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