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LOC111252832 heparan-sulfate 6-O-sulfotransferase 3-B-like [ Varroa destructor (honeybee mite) ]

Gene ID: 111252832, updated on 7-Dec-2023

Summary

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Gene symbol
LOC111252832
Gene description
heparan-sulfate 6-O-sulfotransferase 3-B-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Varroa destructor
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Dermanyssoidea; Varroidae; Varroa
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Genomic context

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See LOC111252832 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Vdes_3.0 (GCF_002443255.1) Unplaced Scaffold NW_019211459.1 (28196099..28202424, complement)

NW_019211459.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111252845 Neighboring gene eukaryotic translation initiation factor 4E type 2-like Neighboring gene activated Cdc42 kinase-like Neighboring gene sialin-like Neighboring gene chromodomain-helicase-DNA-binding protein Mi-2 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019211459 Unplaced Scaffold Reference Vdes_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 3-B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varroa destructor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vdes_3.0 Primary Assembly

Genomic

  1. NW_019211459.1 Reference Vdes_3.0 Primary Assembly

    Range
    28196099..28202424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022811351.1 → XP_022667086.1  heparan-sulfate 6-O-sulfotransferase 3-B-like

    UniProtKB/TrEMBL
    A0A7M7KHQ8
    Conserved Domains (1) summary
    cl22970
    Location:114 → 396
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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