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LOC111249719 transmembrane and TPR repeat-containing protein 3-like [ Varroa destructor (honeybee mite) ]

Gene ID: 111249719, updated on 7-Dec-2023

Summary

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Gene symbol
LOC111249719
Gene description
transmembrane and TPR repeat-containing protein 3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Varroa destructor
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Dermanyssoidea; Varroidae; Varroa
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Genomic context

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See LOC111249719 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Vdes_3.0 (GCF_002443255.1) Unplaced Scaffold NW_019211457.1 (24057772..24068000, complement)

NW_019211457.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111249195 Neighboring gene uncharacterized LOC111249193 Neighboring gene homeobox protein orthopedia B-like Neighboring gene acetoacetyl-CoA synthetase-like Neighboring gene NADH dehydrogenase (ubiquinone) subunit ND-42

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019211457 Unplaced Scaffold Reference Vdes_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varroa destructor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vdes_3.0 Primary Assembly

Genomic

  1. NW_019211457.1 Reference Vdes_3.0 Primary Assembly

    Range
    24057772..24068000 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022803964.1 → XP_022659699.1  transmembrane and TPR repeat-containing protein 3-like

    UniProtKB/TrEMBL
    A0A7M7M9G5
    Conserved Domains (4) summary
    COG0457
    Location:450 → 638
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:571 → 599
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:219 → 289
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:545 → 753
    TPR_11; TPR repeat

RNA

  1. XR_002673061.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases