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Pgant5 polypeptide N-acetylgalactosaminyltransferase 5 [ Varroa destructor (honeybee mite) ]

Gene ID: 111249508, updated on 3-Jul-2024

Summary

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Gene symbol
Pgant5
Gene description
polypeptide N-acetylgalactosaminyltransferase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Varroa destructor
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Dermanyssoidea; Varroidae; Varroa
Orthologs
fruit fly all
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Genomic context

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See Pgant5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Vdes_3.0 (GCF_002443255.1) Unplaced Scaffold NW_019211457.1 (30315854..30319717, complement)

NW_019211457.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111249690 Neighboring gene uncharacterized LOC111249693 Neighboring gene biogenesis of lysosome-related organelles complex 1 subunit 4-like Neighboring gene CCR4-NOT transcription complex subunit 11 Neighboring gene potassium channel subfamily K member 1-like Neighboring gene flocculation protein FLO11-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019211457 Unplaced Scaffold Reference Vdes_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varroa destructor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vdes_3.0 Primary Assembly

Genomic

  1. NW_019211457.1 Reference Vdes_3.0 Primary Assembly

    Range
    30315854..30319717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022803452.1 → XP_022659187.1  polypeptide N-acetylgalactosaminyltransferase 13-like

    UniProtKB/TrEMBL
    A0A7M7K209
    Conserved Domains (2) summary
    cd02510
    Location:139 → 439
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:452 → 569
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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