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LOC111244927 UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like [ Varroa destructor (honeybee mite) ]

Gene ID: 111244927, updated on 7-Dec-2023

Summary

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Gene symbol
LOC111244927
Gene description
UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Varroa destructor
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Dermanyssoidea; Varroidae; Varroa
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Genomic context

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See LOC111244927 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Vdes_3.0 (GCF_002443255.1) Unplaced Scaffold NW_019211455.1 (37588728..37592058, complement)

NW_019211455.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA cleavage complex 2 protein Pcf11-like Neighboring gene protein tyrosine phosphatase domain-containing protein 1-like Neighboring gene probable ubiquitin carboxyl-terminal hydrolase MINDY-4 Neighboring gene uncharacterized LOC111244013 Neighboring gene phosphatidylinositol 5-phosphate 4-kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019211455 Unplaced Scaffold Reference Vdes_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varroa destructor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vdes_3.0 Primary Assembly

Genomic

  1. NW_019211455.1 Reference Vdes_3.0 Primary Assembly

    Range
    37588728..37592058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022792517.1 → XP_022648252.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A7M7J8C8
    Conserved Domains (1) summary
    cl26217
    Location:277 → 438
    DUF4094; Domain of unknown function (DUF4094)

  2. XM_022792514.1 → XP_022648249.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A7M7J8C8
    Conserved Domains (1) summary
    cl26217
    Location:277 → 438
    DUF4094; Domain of unknown function (DUF4094)

  3. XM_022792513.1 → XP_022648248.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A7M7J8C8
    Conserved Domains (1) summary
    cl26217
    Location:277 → 438
    DUF4094; Domain of unknown function (DUF4094)

  4. XM_022792518.1 → XP_022648253.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A7M7J8C8
    Conserved Domains (1) summary
    cl26217
    Location:277 → 438
    DUF4094; Domain of unknown function (DUF4094)

  5. XM_022792515.1 → XP_022648250.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A7M7J8C8
    Conserved Domains (1) summary
    cl26217
    Location:277 → 438
    DUF4094; Domain of unknown function (DUF4094)

  6. XM_022792516.1 → XP_022648251.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A7M7J8C8
    Conserved Domains (1) summary
    cl26217
    Location:277 → 438
    DUF4094; Domain of unknown function (DUF4094)

  7. XM_022792512.1 → XP_022648247.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like isoform X1

    UniProtKB/TrEMBL
    A0A7M7MAP4
    Conserved Domains (1) summary
    cl26217
    Location:290 → 451
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein
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