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LOC111244134 laminin subunit alpha-1-like [ Varroa destructor (honeybee mite) ]

Gene ID: 111244134, updated on 1-Jul-2024

Summary

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Gene symbol
LOC111244134
Gene description
laminin subunit alpha-1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Varroa destructor
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Dermanyssoidea; Varroidae; Varroa
Orthologs
fruit fly all
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Genomic context

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See LOC111244134 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
100 current Vdes_3.0 (GCF_002443255.1) Unplaced Scaffold NW_019211455.1 (1338499..1361979, complement)

NW_019211455.1Genomic Context describing neighboring genes Neighboring gene SET domain-containing protein 4-like Neighboring gene uncharacterized LOC111244998 Neighboring gene DNA ligase 4-like Neighboring gene DNA-directed RNA polymerases I, II, and III subunit Rpb8 Neighboring gene uncharacterized protein DDB_G0280205-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019211455 Unplaced Scaffold Reference Vdes_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varroa destructor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vdes_3.0 Primary Assembly

Genomic

  1. NW_019211455.1 Reference Vdes_3.0 Primary Assembly

    Range
    1338499..1361979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022790857.1 → XP_022646592.1  laminin subunit alpha-1-like isoform X1

    UniProtKB/TrEMBL
    A0A7M7JHY6
    Conserved Domains (7) summary
    smart00180
    Location:989 → 1035
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1493 → 1539
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2414 → 2574
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1133 → 1180
    Laminin_EGF; Laminin EGF domain
    pfam00052
    Location:1307 → 1450
    Laminin_B; Laminin B (Domain IV)
    cl02806
    Location:57 → 274
    Laminin_N; Laminin N-terminal (Domain VI)
    cl25732
    Location:1801 → 2209
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_022790858.1 → XP_022646593.1  laminin subunit alpha-1-like isoform X2

    UniProtKB/TrEMBL
    A0A7M7M3U9
    Conserved Domains (7) summary
    smart00180
    Location:988 → 1034
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1492 → 1538
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2413 → 2573
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1132 → 1179
    Laminin_EGF; Laminin EGF domain
    pfam00052
    Location:1306 → 1449
    Laminin_B; Laminin B (Domain IV)
    cl02806
    Location:56 → 273
    Laminin_N; Laminin N-terminal (Domain VI)
    cl25732
    Location:1800 → 2208
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
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