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lman2la lectin, mannose-binding 2-like a [ Seriola dumerili (greater amberjack) ]

Gene ID: 111240024, updated on 19-Jun-2024

Summary

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Gene symbol
lman2la
Gene description
lectin, mannose-binding 2-like a
See related
Ensembl:ENSSDUG00000004710
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
lman2l
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019182858.1 (102795..109540)

NW_019182858.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 13-like Neighboring gene mitochondrial fission process 1 Neighboring gene ADP-ribosylation factor-like protein 3 Neighboring gene WW domain binding protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019182858 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein
Names
lectin, mannose binding 2 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019182858.1 Reference Sdu_1.0 Primary Assembly

    Range
    102795..109540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022769981.1 → XP_022625702.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A3B4TKA2
    Related
    ENSSDUP00000006407.1, ENSSDUT00000006536.1
    Conserved Domains (2) summary
    cl01312
    Location:298 → 338
    Sbt_1; Na+-dependent bicarbonate transporter superfamily
    cl14058
    Location:30 → 291
    lectin_L-type; legume lectins

  2. XM_022769982.1 → XP_022625703.1  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0A3B4TKB2
    Related
    ENSSDUP00000006417.1, ENSSDUT00000006546.1
    Conserved Domains (2) summary
    cl01312
    Location:287 → 327
    Sbt_1; Na+-dependent bicarbonate transporter superfamily
    cl14058
    Location:30 → 280
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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