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zbtb44 zinc finger and BTB domain containing 44 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111238518, updated on 15-Mar-2024

Summary

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Gene symbol
zbtb44
Gene description
zinc finger and BTB domain containing 44
See related
Ensembl:ENSSDUG00000012619
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019175669.1 (106189..121957)

NW_019175669.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 15 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 8 Neighboring gene chromosome unknown C11orf53 homolog Neighboring gene uncharacterized LOC111238526

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019175669 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 44

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019175669.1 Reference Sdu_1.0 Primary Assembly

    Range
    106189..121957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022768080.1 → XP_022623801.1  zinc finger and BTB domain-containing protein 44 isoform X1

    Conserved Domains (6) summary
    COG5048
    Location:431 → 495
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:345 → 495
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:447 → 467
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:535 → 557
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:55 → 162
    BTB; BTB/POZ domain
    pfam13465
    Location:459 → 484
    zf-H2C2_2; Zinc-finger double domain

  2. XM_022768081.1 → XP_022623802.1  zinc finger and BTB domain-containing protein 44 isoform X2

    Conserved Domains (6) summary
    COG5048
    Location:397 → 461
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:311 → 461
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:413 → 433
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:501 → 523
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:21 → 128
    BTB; BTB/POZ domain
    pfam13465
    Location:425 → 450
    zf-H2C2_2; Zinc-finger double domain

  3. XM_022768082.1 → XP_022623803.1  zinc finger and BTB domain-containing protein 44 isoform X3

    UniProtKB/TrEMBL
    A0A3B4UFY7
    Related
    ENSSDUP00000017282.1, ENSSDUT00000017597.1
    Conserved Domains (5) summary
    COG5048
    Location:431 → 495
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:345 → 495
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:447 → 467
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:55 → 162
    BTB; BTB/POZ domain
    pfam13465
    Location:459 → 484
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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