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chst2b carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2b [ Seriola dumerili (greater amberjack) ]

Gene ID: 111237824, updated on 15-Mar-2024

Summary

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Gene symbol
chst2b
Gene description
carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
chst2
Orthologs
zebrafish all
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Genomic context

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See chst2b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019175379.1 (506970..509169, complement)

NW_019175379.1Genomic Context describing neighboring genes Neighboring gene procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 Neighboring gene divergent protein kinase domain 2Ab Neighboring gene sodium/hydrogen exchanger 9-like Neighboring gene transient receptor potential cation channel, subfamily C, member 1 Neighboring gene procollagen C-endopeptidase enhancer 2b Neighboring gene U2 snRNP-associated SURP domain containing

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019175379 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019175379.1 Reference Sdu_1.0 Primary Assembly

    Range
    506970..509169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022767083.1 → XP_022622804.1  carbohydrate sulfotransferase 2

    UniProtKB/TrEMBL
    A0A3B4TP44
    Conserved Domains (1) summary
    cl21551
    Location:110 → 381
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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