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alg13 ALG13 UDP-N-acetylglucosaminyltransferase subunit [ Seriola dumerili (greater amberjack) ]

Gene ID: 111237584, updated on 15-Mar-2024

Summary

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Gene symbol
alg13
Gene description
ALG13 UDP-N-acetylglucosaminyltransferase subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
zebrafish all
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Genomic context

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See alg13 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019175256.1 (202375..210657, complement)

NW_019175256.1Genomic Context describing neighboring genes Neighboring gene wiskott-Aldrich syndrome protein family member 3-like Neighboring gene uncharacterized LOC111237553 Neighboring gene alanyl-tRNA synthetase 2, mitochondrial (putative) Neighboring gene calpain-2 catalytic subunit-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019175256 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019175256.1 Reference Sdu_1.0 Primary Assembly

    Range
    202375..210657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022766730.1 → XP_022622451.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

    Conserved Domains (2) summary
    cd04508
    Location:286 → 334
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:29 → 108
    OTU; OTU-like cysteine protease
Nucleotide Protein
Heading Accession and Version

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