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itga8 integrin, alpha 8 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111236795, updated on 15-Mar-2024

Summary

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Gene symbol
itga8
Gene description
integrin, alpha 8
See related
Ensembl:ENSSDUG00000007007
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See itga8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174978.1 (412969..452333, complement)

NW_019174978.1Genomic Context describing neighboring genes Neighboring gene protein FAM8A1-like Neighboring gene ataxin-1-like Neighboring gene MINDY lysine 48 deubiquitinase 3 Neighboring gene probable assembly chaperone of rpl4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174978 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-8
Names
integrin subunit alpha 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174978.1 Reference Sdu_1.0 Primary Assembly

    Range
    412969..452333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022765654.1 → XP_022621375.1  integrin alpha-8

    UniProtKB/TrEMBL
    A0A3B4TUX7
    Related
    ENSSDUP00000009540.1, ENSSDUT00000009727.1
    Conserved Domains (2) summary
    smart00191
    Location:365 → 411
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:467 → 913
    Integrin_alpha2; Integrin alpha
Nucleotide Protein
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