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galnt1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111236776, updated on 15-Mar-2024

Summary

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Gene symbol
galnt1
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
See related
Ensembl:ENSSDUG00000007783
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See galnt1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174978.1 (911566..949363)

NW_019174978.1Genomic Context describing neighboring genes Neighboring gene scratch family transcriptional repressor 1 Neighboring gene INO80 complex subunit C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174978 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174978.1 Reference Sdu_1.0 Primary Assembly

    Range
    911566..949363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022765627.1 → XP_022621348.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4TWM2, A0A3B4TY88
    Related
    ENSSDUP00000010660.1, ENSSDUT00000010857.1
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_022765628.1 → XP_022621349.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B4TWM2
    Conserved Domains (2) summary
    cd02510
    Location:45 → 345
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:358 → 474
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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