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LOC111236314 myosin-10 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111236314, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111236314
Gene description
myosin-10
See related
Ensembl:ENSSDUG00000018917
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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See LOC111236314 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174876.1 (425581..479724, complement)

NW_019174876.1Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 56 Neighboring gene ubinuclein 2a Neighboring gene GTPase IMAP family member 4-like Neighboring gene cytoglobin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174876 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytoskeletal motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myosin-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174876.1 Reference Sdu_1.0 Primary Assembly

    Range
    425581..479724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022765005.1 → XP_022620726.1  myosin-10 isoform X3

    UniProtKB/TrEMBL
    A0A3B4V627
    Conserved Domains (3) summary
    cd14920
    Location:99 → 802
    MYSc_Myh10; class II myosin heavy chain 10, motor domain
    pfam01576
    Location:879 → 1959
    Myosin_tail_1; Myosin tail
    pfam02736
    Location:33 → 72
    Myosin_N; Myosin N-terminal SH3-like domain

  2. XM_022765004.1 → XP_022620725.1  myosin-10 isoform X2

    UniProtKB/TrEMBL
    A0A3B4V627
    Related
    ENSSDUP00000026156.1, ENSSDUT00000026624.1
    Conserved Domains (3) summary
    cd14920
    Location:99 → 771
    MYSc_Myh10; class II myosin heavy chain 10, motor domain
    pfam01576
    Location:848 → 1928
    Myosin_tail_1; Myosin tail
    pfam02736
    Location:33 → 72
    Myosin_N; Myosin N-terminal SH3-like domain

  3. XM_022765003.1 → XP_022620724.1  myosin-10 isoform X1

    UniProtKB/TrEMBL
    A0A3B4V627
    Conserved Domains (3) summary
    cd14920
    Location:99 → 781
    MYSc_Myh10; class II myosin heavy chain 10, motor domain
    pfam01576
    Location:858 → 1938
    Myosin_tail_1; Myosin tail
    pfam02736
    Location:33 → 72
    Myosin_N; Myosin N-terminal SH3-like domain
Nucleotide Protein
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