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kirrel3l kirre like nephrin family adhesion molecule 3, like [ Seriola dumerili (greater amberjack) ]

Gene ID: 111234053, updated on 15-Mar-2024

Summary

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Gene symbol
kirrel3l
Gene description
kirre like nephrin family adhesion molecule 3, like
See related
Ensembl:ENSSDUG00000012992
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
kirrel2
Orthologs
human zebrafish all
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Genomic context

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See kirrel3l in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174688.1 (355713..389950, complement)

NW_019174688.1Genomic Context describing neighboring genes Neighboring gene amyloid beta (A4) precursor-like protein 1 Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene NPHS1 adhesion molecule, nephrin Neighboring gene FXYD domain containing ion transport regulator 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174688 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 2
Names
kirre like nephrin family adhesion molecule 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174688.1 Reference Sdu_1.0 Primary Assembly

    Range
    355713..389950 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022761963.1 → XP_022617684.1  kin of IRRE-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A3B4UI09
    Conserved Domains (4) summary
    cd05759
    Location:136 → 217
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:224 → 293
    Ig_2; Immunoglobulin domain
    cd05758
    Location:389 → 486
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    cl28434
    Location:306 → 387
    I-set; Immunoglobulin I-set domain

  2. XM_022761964.1 → XP_022617685.1  kin of IRRE-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A3B4UI09, A0A3B4UJE2
    Related
    ENSSDUP00000017825.1, ENSSDUT00000018150.1
    Conserved Domains (4) summary
    cd05759
    Location:136 → 217
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:224 → 293
    Ig_2; Immunoglobulin domain
    cd05758
    Location:389 → 486
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    cl28434
    Location:306 → 387
    I-set; Immunoglobulin I-set domain

  3. XM_022761961.1 → XP_022617682.1  kin of IRRE-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3B4UI09
    Conserved Domains (4) summary
    cd05759
    Location:136 → 217
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:224 → 293
    Ig_2; Immunoglobulin domain
    cd05758
    Location:389 → 486
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    cl28434
    Location:306 → 387
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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