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LOC111233896 dnaJ homolog subfamily B member 6-like [ Seriola dumerili (greater amberjack) ]

Gene ID: 111233896, updated on 25-Jan-2024

Summary

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Gene symbol
LOC111233896
Gene description
dnaJ homolog subfamily B member 6-like
See related
Ensembl:ENSSDUG00000004617
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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See LOC111233896 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174687.1 (2595808..2602853, complement)

NW_019174687.1Genomic Context describing neighboring genes Neighboring gene XK related 4 Neighboring gene E3 ubiquitin-protein ligase RNF31-like Neighboring gene potassium voltage-gated channel subfamily B member 2-like Neighboring gene exocyst complex component 3 Neighboring gene solute carrier family 39 member 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174687 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily B member 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174687.1 Reference Sdu_1.0 Primary Assembly

    Range
    2595808..2602853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022761809.1 → XP_022617530.1  dnaJ homolog subfamily B member 6-like

    UniProtKB/TrEMBL
    A0A3B4TJ77
    Related
    ENSSDUP00000006264.1, ENSSDUT00000006390.1
    Conserved Domains (1) summary
    cl28246
    Location:3 → 140
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  2. XM_022761808.1 → XP_022617529.1  dnaJ homolog subfamily B member 6-like

    UniProtKB/TrEMBL
    A0A3B4TJ77
    Conserved Domains (1) summary
    cl28246
    Location:3 → 140
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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