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tpx2 TPX2 microtubule nucleation factor [ Seriola dumerili (greater amberjack) ]

Gene ID: 111233772, updated on 15-Mar-2024

Summary

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Gene symbol
tpx2
Gene description
TPX2 microtubule nucleation factor
See related
Ensembl:ENSSDUG00000002248
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See tpx2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174680.1 (275905..283313, complement)

NW_019174680.1Genomic Context describing neighboring genes Neighboring gene KIAA2013 ortholog Neighboring gene procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a Neighboring gene rho-related GTP-binding protein RhoA-C Neighboring gene thiamin pyrophosphokinase 2 Neighboring gene glucocorticoid modulatory element binding protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174680 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in activation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mitotic spindle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
targeting protein for Xklp2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174680.1 Reference Sdu_1.0 Primary Assembly

    Range
    275905..283313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022761661.1 → XP_022617382.1  targeting protein for Xklp2 isoform X2

    UniProtKB/TrEMBL
    A0A3B4T9X9
    Conserved Domains (2) summary
    pfam06886
    Location:633 → 687
    TPX2; Targeting protein for Xklp2 (TPX2)
    pfam12214
    Location:337 → 466
    TPX2_importin; Cell cycle regulated microtubule associated protein

  2. XM_022761660.1 → XP_022617381.1  targeting protein for Xklp2 isoform X1

    UniProtKB/TrEMBL
    A0A3B4T9X0, A0A3B4T9X9
    Related
    ENSSDUP00000002896.1, ENSSDUT00000002969.1
    Conserved Domains (2) summary
    pfam06886
    Location:639 → 693
    TPX2; Targeting protein for Xklp2 (TPX2)
    pfam12214
    Location:337 → 466
    TPX2_importin; Cell cycle regulated microtubule associated protein
Nucleotide Protein
Heading Accession and Version

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