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sh2d5 SH2 domain containing 5 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111233579, updated on 15-Mar-2024

Summary

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Gene symbol
sh2d5
Gene description
SH2 domain containing 5
See related
Ensembl:ENSSDUG00000018264
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See sh2d5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174664.1 (1720804..1727168)

NW_019174664.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4 gamma, 3a Neighboring gene heterochromatin protein 1, binding protein 3 Neighboring gene kinesin family member 17 Neighboring gene uncharacterized LOC111233542 Neighboring gene YOD1 deubiquitinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174664 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SH2 domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174664.1 Reference Sdu_1.0 Primary Assembly

    Range
    1720804..1727168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022761428.1 → XP_022617149.1  SH2 domain-containing protein 5 isoform X1

    Conserved Domains (2) summary
    cd00173
    Location:281 → 357
    SH2; Src homology 2 (SH2) domain
    cd13157
    Location:17 → 144
    PTB_tensin-related; Tensin-related Phosphotyrosine-binding (PTB) domain

  2. XM_022761430.1 → XP_022617151.1  SH2 domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A3B4V4V1, A0A3B4V4V8
    Related
    ENSSDUP00000025145.1, ENSSDUT00000025608.1
    Conserved Domains (1) summary
    cd13157
    Location:17 → 144
    PTB_tensin-related; Tensin-related Phosphotyrosine-binding (PTB) domain

  3. XM_022761429.1 → XP_022617150.1  SH2 domain-containing protein 5 isoform X1

    Conserved Domains (2) summary
    cd00173
    Location:281 → 357
    SH2; Src homology 2 (SH2) domain
    cd13157
    Location:17 → 144
    PTB_tensin-related; Tensin-related Phosphotyrosine-binding (PTB) domain
Nucleotide Protein
Heading Accession and Version

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