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LOC111232097 torsin-1A-interacting protein 2-like [ Seriola dumerili (greater amberjack) ]

Gene ID: 111232097, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111232097
Gene description
torsin-1A-interacting protein 2-like
See related
Ensembl:ENSSDUG00000007857
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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See LOC111232097 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174577.1 (2220002..2224611, complement)

NW_019174577.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111232102 Neighboring gene uncharacterized LOC111232101 Neighboring gene torsin-1A-interacting protein 2-like Neighboring gene olfactomedin-like 2Ba

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174577 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174577.1 Reference Sdu_1.0 Primary Assembly

    Range
    2220002..2224611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022759454.1 → XP_022615175.1  torsin-1A-interacting protein 2-like isoform X3

    Conserved Domains (1) summary
    pfam05609
    Location:268 → 483
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_022759452.1 → XP_022615173.1  torsin-1A-interacting protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A3B4TWS4
    Related
    ENSSDUP00000010754.1, ENSSDUT00000010951.1
    Conserved Domains (1) summary
    pfam05609
    Location:309 → 524
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_022759453.1 → XP_022615174.1  torsin-1A-interacting protein 2-like isoform X2

    Conserved Domains (1) summary
    pfam05609
    Location:306 → 521
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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