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myl12.2 myosin, light chain 12, genome duplicate 2 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111230984, updated on 15-Mar-2024

Summary

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Gene symbol
myl12.2
Gene description
myosin, light chain 12, genome duplicate 2
See related
Ensembl:ENSSDUG00000014070
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
zebrafish all
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Genomic context

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See myl12.2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174546.1 (4013994..4016425)

NW_019174546.1Genomic Context describing neighboring genes Neighboring gene lipin 2 Neighboring gene myomesin 1a (skelemin) Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene BCL2 associated athanogene 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174546 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myosin regulatory light chain 2, smooth muscle minor isoform-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174546.1 Reference Sdu_1.0 Primary Assembly

    Range
    4013994..4016425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022757896.1 → XP_022613617.1  myosin regulatory light chain 2, smooth muscle minor isoform-like

    UniProtKB/TrEMBL
    A0A3B4TZS5, A0A3B4UKW3
    Related
    ENSSDUP00000019301.1, ENSSDUT00000019647.1
    Conserved Domains (1) summary
    COG5126
    Location:19 → 169
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
Nucleotide Protein
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