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extl2 exostosin-like glycosyltransferase 2 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111229104, updated on 15-Mar-2024

Summary

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Gene symbol
extl2
Gene description
exostosin-like glycosyltransferase 2
See related
Ensembl:ENSSDUG00000018674
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See extl2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174481.1 (6724354..6726659, complement)

NW_019174481.1Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 12a Neighboring gene uncharacterized LOC111229106 Neighboring gene presenilin associated, rhomboid-like a Neighboring gene ring finger and CCCH-type domains 1b Neighboring gene uncharacterized LOC111229100

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174481 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: exostosin-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174481.1 Reference Sdu_1.0 Primary Assembly

    Range
    6724354..6726659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022755283.1 → XP_022611004.1  LOW QUALITY PROTEIN: exostosin-like 2

    UniProtKB/TrEMBL
    A0A3B4V567
    Related
    ENSSDUP00000025742.1, ENSSDUT00000026208.1
    Conserved Domains (1) summary
    pfam09258
    Location:81 → 342
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version

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