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st3gal3b ST3 beta-galactoside alpha-2,3-sialyltransferase 3b [ Seriola dumerili (greater amberjack) ]

Gene ID: 111229061, updated on 15-Mar-2024

Summary

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Gene symbol
st3gal3b
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 3b
See related
Ensembl:ENSSDUG00000012266
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
zebrafish all
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Genomic context

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See st3gal3b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174481.1 (3172098..3207454, complement)

NW_019174481.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111229091 Neighboring gene prostaglandin E receptor 4 (subtype EP4) c Neighboring gene lysine-specific demethylase 4A-like Neighboring gene protein ABHD8-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174481 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174481.1 Reference Sdu_1.0 Primary Assembly

    Range
    3172098..3207454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022755222.1 → XP_022610943.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like

    UniProtKB/TrEMBL
    A0A3B4UDU8, A0A3B4UF32
    Related
    ENSSDUP00000016803.1, ENSSDUT00000017109.1
    Conserved Domains (1) summary
    pfam00777
    Location:123 → 388
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version

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