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LOC111228974 integrin alpha-6-like [ Seriola dumerili (greater amberjack) ]

Gene ID: 111228974, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111228974
Gene description
integrin alpha-6-like
See related
Ensembl:ENSSDUG00000014125
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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See LOC111228974 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174481.1 (4160931..4175695)

NW_019174481.1Genomic Context describing neighboring genes Neighboring gene cytoplasmic dynein 1 intermediate chain 2-like Neighboring gene calcium-binding mitochondrial carrier protein Aralar1-like Neighboring gene methionyl aminopeptidase type 1D (mitochondrial) Neighboring gene neurabin-2-like Neighboring gene rap guanine nucleotide exchange factor 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174481 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174481.1 Reference Sdu_1.0 Primary Assembly

    Range
    4160931..4175695
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022755105.1 → XP_022610826.1  integrin alpha-6-like isoform X1

    UniProtKB/TrEMBL
    A0A3B4UL26
    Related
    ENSSDUP00000019371.1, ENSSDUT00000019717.1
    Conserved Domains (3) summary
    smart00191
    Location:376 → 425
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam01839
    Location:318 → 356
    FG-GAP; FG-GAP repeat
    pfam08441
    Location:474 → 934
    Integrin_alpha2; Integrin alpha

  2. XM_022755106.1 → XP_022610827.1  integrin alpha-6-like isoform X2

    UniProtKB/TrEMBL
    A0A3B4UL59
    Related
    ENSSDUP00000019406.1, ENSSDUT00000019753.1
    Conserved Domains (3) summary
    smart00191
    Location:376 → 425
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam01839
    Location:318 → 356
    FG-GAP; FG-GAP repeat
    pfam08441
    Location:474 → 934
    Integrin_alpha2; Integrin alpha
Nucleotide Protein
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