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pigv phosphatidylinositol glycan anchor biosynthesis, class V [ Seriola dumerili (greater amberjack) ]

Gene ID: 111227751, updated on 15-Mar-2024

Summary

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Gene symbol
pigv
Gene description
phosphatidylinositol glycan anchor biosynthesis, class V
See related
Ensembl:ENSSDUG00000017157
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See pigv in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174446.1 (10109842..10112740)

NW_019174446.1Genomic Context describing neighboring genes Neighboring gene GPN-loop GTPase 2 Neighboring gene AT-rich interaction domain 1Aa Neighboring gene zinc finger DHHC-type palmitoyltransferase 18a Neighboring gene terminal nucleotidyltransferase 5ba

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174446 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mannosyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174446.1 Reference Sdu_1.0 Primary Assembly

    Range
    10109842..10112740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022753445.1 → XP_022609166.1  GPI mannosyltransferase 2

    UniProtKB/TrEMBL
    A0A3B4V0G7
    Related
    ENSSDUP00000023590.1, ENSSDUT00000024029.1
    Conserved Domains (1) summary
    cl21590
    Location:5 → 507
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
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