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LOC111227735 exostosin-1a-like [ Seriola dumerili (greater amberjack) ]

Gene ID: 111227735, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111227735
Gene description
exostosin-1a-like
See related
Ensembl:ENSSDUG00000012893
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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See LOC111227735 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174446.1 (6652929..6689808)

NW_019174446.1Genomic Context describing neighboring genes Neighboring gene NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase Neighboring gene WASH complex subunit 5 Neighboring gene double-strand-break repair protein rad21 homolog Neighboring gene eukaryotic translation initiation factor 3 subunit H

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174446 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1a-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174446.1 Reference Sdu_1.0 Primary Assembly

    Range
    6652929..6689808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022753423.1 → XP_022609144.1  exostosin-1a-like

    UniProtKB/TrEMBL
    A0A3B4UHG3
    Related
    ENSSDUP00000017658.1, ENSSDUT00000017981.1
    Conserved Domains (2) summary
    pfam03016
    Location:108 → 393
    Exostosin; Exostosin family
    pfam09258
    Location:477 → 722
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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