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thumpd2 THUMP domain containing 2 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111227456, updated on 15-Mar-2024

Summary

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Gene symbol
thumpd2
Gene description
THUMP domain containing 2
See related
Ensembl:ENSSDUG00000019898
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See thumpd2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174442.1 (1363632..1369839)

NW_019174442.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 8 member 1b Neighboring gene uncharacterized LOC111227463 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 3 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 33

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174442 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174442.1 Reference Sdu_1.0 Primary Assembly

    Range
    1363632..1369839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022752964.1 → XP_022608685.1  THUMP domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3B4VC30
    Related
    ENSSDUP00000027500.1, ENSSDUT00000027984.1
    Conserved Domains (2) summary
    smart00981
    Location:272 → 352
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:362 → 507
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_022752965.1 → XP_022608686.1  THUMP domain-containing protein 2 isoform X2

    Conserved Domains (2) summary
    smart00981
    Location:238 → 318
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:328 → 473
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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