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tmtc2b transmembrane O-mannosyltransferase targeting cadherins 2b [ Seriola dumerili (greater amberjack) ]

Gene ID: 111225256, updated on 15-Mar-2024

Summary

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Gene symbol
tmtc2b
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2b
See related
Ensembl:ENSSDUG00000000868
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
zebrafish all
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Genomic context

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See tmtc2b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174402.1 (3121211..3208783, complement)

NW_019174402.1Genomic Context describing neighboring genes Neighboring gene bicaudal D homolog 1a Neighboring gene protein FAM180A-like Neighboring gene solute carrier family 23 member 4 Neighboring gene protein arginine N-methyltransferase 8-B Neighboring gene calcium release activated channel regulator 2Aa Neighboring gene tetraspanin 9a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174402 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174402.1 Reference Sdu_1.0 Primary Assembly

    Range
    3121211..3208783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022750015.1 → XP_022605736.1  transmembrane and TPR repeat-containing protein 2-like

    UniProtKB/TrEMBL
    A0A3B4T4N4
    Related
    ENSSDUP00000001108.1, ENSSDUT00000001155.1
    Conserved Domains (4) summary
    COG0457
    Location:489 → 730
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:501 → 529
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:250 → 316
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:651 → 831
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases