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LOC111225169 probable polypeptide N-acetylgalactosaminyltransferase 8 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111225169, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111225169
Gene description
probable polypeptide N-acetylgalactosaminyltransferase 8
See related
Ensembl:ENSSDUG00000022100
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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See LOC111225169 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174402.1 (2810262..2814950)

NW_019174402.1Genomic Context describing neighboring genes Neighboring gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 Neighboring gene NADH:ubiquinone oxidoreductase subunit A9a Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8 Neighboring gene RIB43A domain with coiled-coils 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174402 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polypeptide N-acetylgalactosaminyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174402.1 Reference Sdu_1.0 Primary Assembly

    Range
    2810262..2814950
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022749861.1 → XP_022605582.1  probable polypeptide N-acetylgalactosaminyltransferase 8

    UniProtKB/TrEMBL
    A0A3B4VIA2
    Related
    ENSSDUP00000030693.1, ENSSDUT00000031228.1
    Conserved Domains (2) summary
    cd00161
    Location:431 → 557
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    cl11394
    Location:117 → 418
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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