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alkbh8 alkB homolog 8, tRNA methyltransferase [ Seriola dumerili (greater amberjack) ]

Gene ID: 111224087, updated on 15-Mar-2024

Summary

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Gene symbol
alkbh8
Gene description
alkB homolog 8, tRNA methyltransferase
See related
Ensembl:ENSSDUG00000001609
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See alkbh8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174377.1 (2072739..2084437, complement)

NW_019174377.1Genomic Context describing neighboring genes Neighboring gene guanylate cyclase 1, soluble, alpha 2 Neighboring gene CWF19 like cell cycle control factor 2 Neighboring gene kelch repeat and BTB (POZ) domain containing 3 Neighboring gene sarcolipin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174377 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkylated DNA repair protein alkB homolog 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174377.1 Reference Sdu_1.0 Primary Assembly

    Range
    2072739..2084437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022748476.1 → XP_022604197.1  alkylated DNA repair protein alkB homolog 8

    UniProtKB/TrEMBL
    A0A3B4T7H2
    Related
    ENSSDUP00000002066.1, ENSSDUT00000002129.1
    Conserved Domains (4) summary
    pfam09004
    Location:7 → 40
    DUF1891; Domain of unknown function (DUF1891)
    cd12431
    Location:45 → 124
    RRM_ALKBH8; RNA recognition motif in alkylated DNA repair protein alkB homolog 8 (ALKBH8) and similar proteins
    pfam08241
    Location:425 → 514
    Methyltransf_11; Methyltransferase domain
    cl21496
    Location:131 → 305
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

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