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LOC111223695 xylosyltransferase 1-like [ Seriola dumerili (greater amberjack) ]

Gene ID: 111223695, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111223695
Gene description
xylosyltransferase 1-like
See related
Ensembl:ENSSDUG00000005816
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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See LOC111223695 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174368.1 (63584..100952, complement)

NW_019174368.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111223747 Neighboring gene ring finger protein 25 Neighboring gene K(lysine) acetyltransferase 8 Neighboring gene N-acetylglutamate synthase Neighboring gene secretory phospholipase A2 receptor-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174368 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174368.1 Reference Sdu_1.0 Primary Assembly

    Range
    63584..100952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022747933.1 → XP_022603654.1  xylosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A3B4TNV5
    Related
    ENSSDUP00000007931.1, ENSSDUT00000008076.1
    Conserved Domains (2) summary
    pfam12529
    Location:581 → 764
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:296 → 548
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
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