U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

snrnp40 small nuclear ribonucleoprotein 40 (U5) [ Seriola dumerili (greater amberjack) ]

Gene ID: 111223467, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
snrnp40
Gene description
small nuclear ribonucleoprotein 40 (U5)
See related
Ensembl:ENSSDUG00000009073
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See snrnp40 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174365.1 (5114413..5121010, complement)

NW_019174365.1Genomic Context describing neighboring genes Neighboring gene pumilio RNA-binding family member 1 Neighboring gene sodium/potassium transporting ATPase interacting 1 Neighboring gene zinc finger, CCHC domain containing 17 Neighboring gene fatty acid binding protein 3, muscle and heart

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019174365 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
U5 small nuclear ribonucleoprotein 40 kDa protein
Names
small nuclear ribonucleoprotein U5 subunit 40

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174365.1 Reference Sdu_1.0 Primary Assembly

    Range
    5114413..5121010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022747626.1 → XP_022603347.1  U5 small nuclear ribonucleoprotein 40 kDa protein

    UniProtKB/TrEMBL
    A0A3B4U1L1
    Related
    ENSSDUP00000012469.1, ENSSDUT00000012691.1
    Conserved Domains (2) summary
    cd00200
    Location:54 → 341
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:60 → 97
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.