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matn1 matrilin 1 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111223391, updated on 15-Mar-2024

Summary

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Gene symbol
matn1
Gene description
matrilin 1
See related
Ensembl:ENSSDUG00000008977
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See matn1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174365.1 (5012322..5016818, complement)

NW_019174365.1Genomic Context describing neighboring genes Neighboring gene Yes-related kinase Neighboring gene sestrin 2 Neighboring gene syndecan 3 Neighboring gene pumilio RNA-binding family member 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174365 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cartilage matrix protein
Names
matrilin 1, cartilage matrix protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174365.1 Reference Sdu_1.0 Primary Assembly

    Range
    5012322..5016818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022747513.1 → XP_022603234.1  cartilage matrix protein

    UniProtKB/TrEMBL
    A0A3B4U369
    Related
    ENSSDUP00000012335.1, ENSSDUT00000012557.1
    Conserved Domains (2) summary
    cd01475
    Location:37 → 259
    vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
    cl00057
    Location:266 → 490
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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