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LOC111222736 beta-1,3-galactosyltransferase 1-like [ Seriola dumerili (greater amberjack) ]

Gene ID: 111222736, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111222736
Gene description
beta-1,3-galactosyltransferase 1-like
See related
Ensembl:ENSSDUG00000008972
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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See LOC111222736 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174360.1 (831267..926636)

NW_019174360.1Genomic Context describing neighboring genes Neighboring gene cysteine/serine-rich nuclear protein 3-like Neighboring gene xin actin binding repeat containing 2a Neighboring gene bile salt export pump-like Neighboring gene retinol dehydrogenase 7-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174360 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174360.1 Reference Sdu_1.0 Primary Assembly

    Range
    831267..926636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022746567.1 → XP_022602288.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A3B4U1V3
    Conserved Domains (1) summary
    pfam01762
    Location:94 → 281
    Galactosyl_T; Galactosyltransferase

  2. XM_022746568.1 → XP_022602289.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A3B4U1V3
    Related
    ENSSDUP00000012312.1, ENSSDUT00000012534.1
    Conserved Domains (1) summary
    pfam01762
    Location:94 → 281
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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