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thumpd3 THUMP domain containing 3 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111222101, updated on 15-Mar-2024

Summary

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Gene symbol
thumpd3
Gene description
THUMP domain containing 3
See related
Ensembl:ENSSDUG00000012179
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See thumpd3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174344.1 (641159..660347, complement)

NW_019174344.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily B member 1-like Neighboring gene prostaglandin I2 synthase Neighboring gene SLIT-ROBO Rho GTPase activating protein 3 Neighboring gene RAD18 E3 ubiquitin protein ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174344 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174344.1 Reference Sdu_1.0 Primary Assembly

    Range
    641159..660347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022745670.1 → XP_022601391.1  THUMP domain-containing protein 3

    UniProtKB/TrEMBL
    A0A3B4UDH9, A0A3B4UGB6
    Related
    ENSSDUP00000016690.1, ENSSDUT00000016996.1
    Conserved Domains (2) summary
    cl17173
    Location:269 → 451
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    cl28094
    Location:28 → 458
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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