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c7b complement component 7b [ Seriola dumerili (greater amberjack) ]

Gene ID: 111221121, updated on 15-Mar-2024

Summary

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Gene symbol
c7b
Gene description
complement component 7b
See related
Ensembl:ENSSDUG00000002268
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
zebrafish all
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Genomic context

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See c7b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174336.1 (4147466..4158249, complement)

NW_019174336.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 180b Neighboring gene complement component 6, duplicate 2 Neighboring gene growth hormone receptor-like Neighboring gene coiled-coil domain containing 152

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174336 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of membrane attack complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
complement component C7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174336.1 Reference Sdu_1.0 Primary Assembly

    Range
    4147466..4158249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022744455.1 → XP_022600176.1  complement component C7-like

    UniProtKB/TrEMBL
    A0A3B4TA33
    Related
    ENSSDUP00000002968.1, ENSSDUT00000003041.1
    Conserved Domains (6) summary
    cd00033
    Location:579 → 635
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00057
    Location:711 → 773
    FIMAC; factor I membrane attack complex
    smart00209
    Location:52 → 102
    TSP1; Thrombospondin type 1 repeats
    cd00112
    Location:109 → 140
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam00084
    Location:639 → 692
    Sushi; Sushi repeat (SCR repeat)
    pfam01823
    Location:247 → 456
    MACPF; MAC/Perforin domain
Nucleotide Protein
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