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hs6st3b heparan sulfate 6-O-sulfotransferase 3b [ Seriola dumerili (greater amberjack) ]

Gene ID: 111218896, updated on 15-Mar-2024

Summary

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Gene symbol
hs6st3b
Gene description
heparan sulfate 6-O-sulfotransferase 3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
hs6st3
Orthologs
human zebrafish all
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Genomic context

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See hs6st3b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174307.1 (12770412..12829067, complement)

NW_019174307.1Genomic Context describing neighboring genes Neighboring gene muscleblind-like protein 2a Neighboring gene RAP2A, member of RAS oncogene family Neighboring gene UDP-glucose glycoprotein glucosyltransferase 2 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174307 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 3
Names
heparan sulfate 6-O-sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174307.1 Reference Sdu_1.0 Primary Assembly

    Range
    12770412..12829067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022741381.1 → XP_022597102.1  heparan-sulfate 6-O-sulfotransferase 3

    UniProtKB/TrEMBL
    A0A3B4TAA1
    Conserved Domains (1) summary
    pfam03567
    Location:93 → 356
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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