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mettl5 methyltransferase 5, N6-adenosine [ Seriola dumerili (greater amberjack) ]

Gene ID: 111218830, updated on 15-Mar-2024

Summary

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Gene symbol
mettl5
Gene description
methyltransferase 5, N6-adenosine
See related
Ensembl:ENSSDUG00000020136
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See mettl5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174307.1 (11437401..11439647, complement)

NW_019174307.1Genomic Context describing neighboring genes Neighboring gene phosphoglycerate dehydrogenase Neighboring gene kelch-like family member 23 Neighboring gene small RNA binding exonuclease protection factor La Neighboring gene ubiquitin protein ligase E3 component n-recognin 3 Neighboring gene myosin IIIB

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174307 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA (adenine-N6-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methyltransferase-like protein 5
Names
methyltransferase like 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174307.1 Reference Sdu_1.0 Primary Assembly

    Range
    11437401..11439647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022741306.1 → XP_022597027.1  methyltransferase-like protein 5

    UniProtKB/TrEMBL
    A0A3B4VB38
    Related
    ENSSDUP00000027849.1, ENSSDUT00000028340.1
    Conserved Domains (1) summary
    COG2263
    Location:4 → 207
    COG2263; Predicted RNA methylase [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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