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map3k20a mitogen-activated protein kinase kinase kinase 20a [ Seriola dumerili (greater amberjack) ]

Gene ID: 111218353, updated on 15-Mar-2024

Summary

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Gene symbol
map3k20a
Gene description
mitogen-activated protein kinase kinase kinase 20a
See related
Ensembl:ENSSDUG00000021404
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
zak; map3k20
Orthologs
human zebrafish all
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Genomic context

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See map3k20a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174307.1 (11843028..11868195)

NW_019174307.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 9A-like A Neighboring gene Rap guanine nucleotide exchange factor 4a Neighboring gene cell division cycle associated 7a Neighboring gene sp3a transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174307 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitogen-activated protein kinase kinase kinase 20
Names
sterile alpha motif and leucine zipper containing kinase AZK

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174307.1 Reference Sdu_1.0 Primary Assembly

    Range
    11843028..11868195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022740616.1 → XP_022596337.1  mitogen-activated protein kinase kinase kinase 20 isoform X1

    UniProtKB/TrEMBL
    A0A3B4VFS3, A0A3B4VIS9
    Related
    ENSSDUP00000029705.1, ENSSDUT00000030215.1
    Conserved Domains (2) summary
    cd09529
    Location:338 → 408
    SAM_MLTK; SAM domain of MLTK subfamily
    cl21453
    Location:22 → 263
    PKc_like; Protein Kinases, catalytic domain

  2. XM_022740618.1 → XP_022596339.1  mitogen-activated protein kinase kinase kinase 20 isoform X1

    UniProtKB/TrEMBL
    A0A3B4VFS3, A0A3B4VIS9
    Conserved Domains (2) summary
    cd09529
    Location:338 → 408
    SAM_MLTK; SAM domain of MLTK subfamily
    cl21453
    Location:22 → 263
    PKc_like; Protein Kinases, catalytic domain

  3. XM_022740619.1 → XP_022596340.1  mitogen-activated protein kinase kinase kinase 20 isoform X2

    UniProtKB/TrEMBL
    A0A3B4VFP8
    Related
    ENSSDUP00000029721.1, ENSSDUT00000030233.1
    Conserved Domains (1) summary
    cl21453
    Location:22 → 263
    PKc_like; Protein Kinases, catalytic domain

  4. XM_022740617.1 → XP_022596338.1  mitogen-activated protein kinase kinase kinase 20 isoform X1

    UniProtKB/TrEMBL
    A0A3B4VFS3, A0A3B4VIS9
    Related
    ENSSDUP00000029733.1, ENSSDUT00000030245.1
    Conserved Domains (2) summary
    cd09529
    Location:338 → 408
    SAM_MLTK; SAM domain of MLTK subfamily
    cl21453
    Location:22 → 263
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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