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eif2d eukaryotic translation initiation factor 2D [ Seriola dumerili (greater amberjack) ]

Gene ID: 111217304, updated on 15-Mar-2024

Summary

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Gene symbol
eif2d
Gene description
eukaryotic translation initiation factor 2D
See related
Ensembl:ENSSDUG00000014517
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See eif2d in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174298.1 (2446254..2459143)

NW_019174298.1Genomic Context describing neighboring genes Neighboring gene colony stimulating factor 1b (macrophage) Neighboring gene MAP kinase-activated protein kinase 2-like Neighboring gene fibromodulin b Neighboring gene probable G-protein coupled receptor 139 Neighboring gene solute carrier family 12 member 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174298 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in formation of translation preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 2D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174298.1 Reference Sdu_1.0 Primary Assembly

    Range
    2446254..2459143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022739102.1 → XP_022594823.1  eukaryotic translation initiation factor 2D

    UniProtKB/TrEMBL
    A0A3B4UML8, A0A3B4UNA7
    Related
    ENSSDUP00000019979.1, ENSSDUT00000020332.1
    Conserved Domains (3) summary
    cd11608
    Location:503 → 587
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    cl25957
    Location:19 → 179
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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