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smg6 SMG6 nonsense mediated mRNA decay factor [ Seriola dumerili (greater amberjack) ]

Gene ID: 111217201, updated on 15-Mar-2024

Summary

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Gene symbol
smg6
Gene description
SMG6 nonsense mediated mRNA decay factor
See related
Ensembl:ENSSDUG00000016412
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See smg6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174295.1 (3642802..3656860)

NW_019174295.1Genomic Context describing neighboring genes Neighboring gene reticulon-4 receptor-like 1 Neighboring gene OVCA2 serine hydrolase domain containing Neighboring gene TAO kinase 1b Neighboring gene protein ABHD15-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174295 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomerase RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of telomerase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telomerase-binding protein EST1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174295.1 Reference Sdu_1.0 Primary Assembly

    Range
    3642802..3656860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022738970.1 → XP_022594691.1  telomerase-binding protein EST1A

    UniProtKB/TrEMBL
    A0A3B4UXB7
    Related
    ENSSDUP00000022545.1, ENSSDUT00000022960.1
    Conserved Domains (5) summary
    cd09885
    Location:1449 → 1641
    PIN_Smg6; PIN domain of human telomerase-binding protein EST1, Smg6, and other similar eukaryotic homologs
    sd00006
    Location:959 → 987
    TPR; TPR repeat [structural motif]
    pfam10373
    Location:945 → 1306
    EST1_DNA_bind; Est1 DNA/RNA binding domain
    pfam10374
    Location:832 → 935
    EST1; Telomerase activating protein Est1
    cl26511
    Location:12 → 424
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
Heading Accession and Version

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