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LOC111217057 LIM domain kinase 1-like [ Seriola dumerili (greater amberjack) ]

Gene ID: 111217057, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111217057
Gene description
LIM domain kinase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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See LOC111217057 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174295.1 (4029842..4038814)

NW_019174295.1Genomic Context describing neighboring genes Neighboring gene protein NipSnap homolog 2-like Neighboring gene mitochondrial ribosomal protein S17 Neighboring gene septin 4a Neighboring gene MAX network transcriptional repressor b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174295 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of stress fiber assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM domain kinase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174295.1 Reference Sdu_1.0 Primary Assembly

    Range
    4029842..4038814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022738744.1 → XP_022594465.1  LIM domain kinase 1-like isoform X2

    Conserved Domains (3) summary
    pfam00595
    Location:123 → 206
    PDZ; PDZ domain (Also known as DHR or GLGF)
    cl02475
    Location:48 → 101
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl21453
    Location:333 → 609
    PKc_like; Protein Kinases, catalytic domain

  2. XM_022738743.1 → XP_022594464.1  LIM domain kinase 1-like isoform X1

    Conserved Domains (3) summary
    pfam00595
    Location:146 → 229
    PDZ; PDZ domain (Also known as DHR or GLGF)
    cl02475
    Location:71 → 124
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl21453
    Location:356 → 632
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
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