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pak4 p21 protein (Cdc42/Rac)-activated kinase 4 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111216861, updated on 12-Sep-2024

Summary

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Gene symbol
pak4
Gene description
p21 protein (Cdc42/Rac)-activated kinase 4
See related
Ensembl:ENSSDUG00000002720
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See pak4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174291.1 (1453380..1487666)

NW_019174291.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111216916 Neighboring gene coiled-coil domain containing 9 Neighboring gene uncharacterized LOC111216903 Neighboring gene hypoxia inducible factor 1 subunit alpha, like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174291 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase PAK 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174291.1 Reference Sdu_1.0 Primary Assembly

    Range
    1453380..1487666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022738493.1 → XP_022594214.1  serine/threonine-protein kinase PAK 4-like

    UniProtKB/TrEMBL
    A0A3B4TBV2, A0A3B4TCE8
    Related
    ENSSDUP00000003602.1, ENSSDUT00000003683.1
    Conserved Domains (2) summary
    cd01093
    Location:12 → 46
    CRIB_PAK_like; PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the ...
    cl21453
    Location:372 → 663
    PKc_like; Protein Kinases, catalytic domain

  2. XM_022738494.1 → XP_022594215.1  serine/threonine-protein kinase PAK 4-like

    UniProtKB/TrEMBL
    A0A3B4TBV2, A0A3B4TCE8
    Related
    ENSSDUP00000003609.1, ENSSDUT00000003690.1
    Conserved Domains (2) summary
    cd01093
    Location:12 → 46
    CRIB_PAK_like; PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the ...
    cl21453
    Location:372 → 663
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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