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chst12 carbohydrate sulfotransferase 12 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111216657, updated on 21-Dec-2023

Summary

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Gene symbol
chst12
Gene description
carbohydrate sulfotransferase 12
See related
Ensembl:ENSSDUG00000016749
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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See chst12 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174290.1 (2629935..2637892, complement)

NW_019174290.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111216743 Neighboring gene endoplasmic reticulum to nucleus signaling 2 Neighboring gene eukaryotic translation initiation factor 3, subunit Ba Neighboring gene BRCA1-associated ATM activator 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174290 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174290.1 Reference Sdu_1.0 Primary Assembly

    Range
    2629935..2637892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022738254.1 → XP_022593975.1  carbohydrate sulfotransferase 12

    UniProtKB/TrEMBL
    A0A3B4UXN0
    Related
    ENSSDUP00000023042.1, ENSSDUT00000023464.1
    Conserved Domains (2) summary
    pfam12118
    Location:78 → 138
    SprA-related; SprA-related family
    pfam03567
    Location:168 → 416
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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