U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02575 long intergenic non-protein coding RNA 2575 [ Homo sapiens (human) ]

Gene ID: 111216286, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02575provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2575provided by HGNC
Primary source
HGNC:HGNC:53747
See related
AllianceGenome:HGNC:53747
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
21q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (44485571..44491142)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (42846024..42851625)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (45905454..45911025)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:45895092-45896291 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18574 Neighboring gene uncharacterized LOC124905037 Neighboring gene MT-ND6 pseudogene 21 Neighboring gene MT-ND5 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:45911506-45912006 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:45912034-45913233 Neighboring gene hepatocellular carcinoma ferroptosis associative lncRNA Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45923045-45923564 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:45928270-45929469 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13385 Neighboring gene TSPEAR antisense RNA 1 Neighboring gene thrombospondin type laminin G domain and EAR repeats Neighboring gene TSPEAR antisense RNA 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Epidermal long non-coding RNAs are regulated by ultraviolet irradiation. Kim KH, et al. Gene, 2017 Dec 30. PMID 28942040
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

Go to the top of the page Help

Clone Names

  • FLJ32963, AP001065.15

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_155204.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001065

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    44485571..44491142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    42846024..42851625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases