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LOC111186101 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111186101, updated on 9-Nov-2023

Summary

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Gene symbol
LOC111186101
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4
See related
Ensembl:ENSDLEG00000020498
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
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Genomic context

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See LOC111186101 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098069.1 (61954465..62233402, complement)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160910.1 (9625263..9904198)

NW_022098069.1Genomic Context describing neighboring genes Neighboring gene lysosome-associated membrane glycoprotein 1 pseudogene Neighboring gene UDP glycosyltransferase 8 Neighboring gene guanidinoacetate N-methyltransferase pseudogene Neighboring gene uncharacterized LOC111186122 Neighboring gene U5 spliceosomal RNA Neighboring gene uncharacterized LOC111186123

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098069.1 Reference ASM228892v3 Primary Assembly

    Range
    61954465..62233402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022596311.2 → XP_022452019.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9PYZ2
    Related
    ENSDLEP00000028628.1, ENSDLET00000031440.1
    Conserved Domains (2) summary
    pfam00685
    Location:594 → 845
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 505
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_022596312.2 → XP_022452020.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9Q2U0
    Conserved Domains (2) summary
    pfam12062
    Location:20 → 505
    HSNSD; heparan sulfate-N-deacetylase
    cl21551
    Location:594 → 788
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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