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CHIT1 chitinase 1 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111184619, updated on 15-Mar-2024

Summary

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Gene symbol
CHIT1
Gene description
chitinase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See CHIT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098019.1 (23007740..23018800)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160903.1 (15629063..15640123)

NW_022098019.1Genomic Context describing neighboring genes Neighboring gene ribosomal L1 domain-containing protein 1-like Neighboring gene BTG anti-proliferation factor 2 Neighboring gene chitinase 3 like 1 Neighboring gene adenosine A1 receptor Neighboring gene myosin binding protein H

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: chitotriosidase-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098019.1 Reference ASM228892v3 Primary Assembly

    Range
    23007740..23018800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022593290.1 → XP_022448998.1  LOW QUALITY PROTEIN: chitotriosidase-1

    UniProtKB/TrEMBL
    A0A2Y9Q0Q9
    Conserved Domains (2) summary
    cd02872
    Location:24 → 382
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00494
    Location:420 → 467
    ChtBD2; Chitin-binding domain type 2
Nucleotide Protein
Heading Accession and Version

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