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GPNMB glycoprotein nmb [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111182039, updated on 15-Mar-2024

Summary

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Gene symbol
GPNMB
Gene description
glycoprotein nmb
See related
Ensembl:ENSDLEG00000021726
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See GPNMB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098064.1 (75605805..75634220)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160856.1 (75611817..75640215)

NW_022098064.1Genomic Context describing neighboring genes Neighboring gene kelch like family member 7 Neighboring gene nucleoporin 42 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene mitochondrial assembly of ribosomal large subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane glycoprotein NMB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098064.1 Reference ASM228892v3 Primary Assembly

    Range
    75605805..75634220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022588072.2 → XP_022443780.1  transmembrane glycoprotein NMB

    UniProtKB/TrEMBL
    A0A2Y9PCT0
    Related
    ENSDLEP00000030515.1, ENSDLET00000033511.1
    Conserved Domains (1) summary
    cd00146
    Location:248 → 308
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
Nucleotide Protein
Heading Accession and Version

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