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PKD1L2 polycystin-1-like protein 2 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111179696, updated on 15-Mar-2024

Summary

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Gene symbol
PKD1L2
Gene description
polycystin-1-like protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human all
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Genomic context

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See PKD1L2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
41
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098004.1 (7240873..7323667)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160884.1 (7241424..7324340)

NW_022098004.1Genomic Context describing neighboring genes Neighboring gene c-Maf inducing protein Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene gigaxonin Neighboring gene beta-carotene oxygenase 1 Neighboring gene uncharacterized LOC115802507 Neighboring gene chromosome unknown C16orf46 homolog Neighboring gene glycine cleavage system protein H Neighboring gene ATM interactor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
Names
polycystin 1 like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098004.1 Reference ASM228892v3 Primary Assembly

    Range
    7240873..7323667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030760779.1 → XP_030616639.1  LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2

    UniProtKB/TrEMBL
    A0A7F8K5A7
    Conserved Domains (6) summary
    smart00034
    Location:10 → 136
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    cd01752
    Location:1359 → 1478
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam02010
    Location:642 → 832
    REJ; REJ domain
    pfam02140
    Location:155 → 234
    Gal_Lectin; Galactose binding lectin domain
    pfam08016
    Location:1949 → 2084
    PKD_channel; Polycystin cation channel
    cl02559
    Location:1252 → 1285
    GPS; GPCR proteolysis site, GPS, motif
Nucleotide Protein
Heading Accession and Version

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