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SPTLC2 serine palmitoyltransferase long chain base subunit 2 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111176208, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC2
Gene description
serine palmitoyltransferase long chain base subunit 2
See related
Ensembl:ENSDLEG00000014493
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See SPTLC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098016.1 (25364427..25474482)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160871.1 (25256628..25366692)

NW_022098016.1Genomic Context describing neighboring genes Neighboring gene RAD52 motif-containing protein 1-like Neighboring gene SRA stem-loop interacting RNA binding protein Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene protein transport protein Sec24C pseudogene Neighboring gene small ubiquitin-related modifier 1 pseudogene Neighboring gene isthmin 2 Neighboring gene activator of HSP90 ATPase activity 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098016.1 Reference ASM228892v3 Primary Assembly

    Range
    25364427..25474482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022576435.1 → XP_022432143.1  serine palmitoyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9NRZ1
    Conserved Domains (1) summary
    PLN02483
    Location:66 → 434
    PLN02483; serine palmitoyltransferase

  2. XM_022576433.2 → XP_022432141.1  serine palmitoyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9NGP0
    Conserved Domains (1) summary
    PLN02483
    Location:66 → 434
    PLN02483; serine palmitoyltransferase

  3. XM_022576436.1 → XP_022432144.1  serine palmitoyltransferase 2 isoform X4

    UniProtKB/TrEMBL
    A0A2Y9NBB2
    Conserved Domains (1) summary
    PLN02483
    Location:66 → 434
    PLN02483; serine palmitoyltransferase

  4. XM_022576432.2 → XP_022432140.1  serine palmitoyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9NDE2
    Related
    ENSDLEP00000019897.1, ENSDLET00000021929.1
    Conserved Domains (1) summary
    PLN02483
    Location:66 → 544
    PLN02483; serine palmitoyltransferase
Nucleotide Protein
Heading Accession and Version

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